Design and SAR of P1-P3 ketoamide derived macrocyclic inhibitors of HCV protease

MEDI 460

Srikanth Venkatraman, Srikanth.Venkatraman@spcorp.com1, Francisco Velazquez2, Wanli Wu1, Melissa Blackman3, Ashok Arasappan2, Frank Bennett2, Stephane L Bogen, stephane.bogen@spcorp.com2, Kevin Chen, kevin.chen@spcorp.com4, Yuhua Huang2, Edwin Jao2, Latha Nair2, Weidong Pan2, Patrick Pinto2, Mousumi Sannigrahi2, Bancha Vibulbhan2, Weiying Yang2, Anil Saksena2, Viyyoor Girijavallabhan, Xiao Tong5, K-C. Cheng6, Neng-Yang Shih7, and F. George Njoroge2. (1) Chemical Research, Schering Plough Research Institute, 2015 Galloping Hill Road, A-301, MS 3545, Kenilworth, NJ 07033, (2) Chemical Research, Schering-Plough Research Institute, 2015 Galloping Hill Rd, K-15-3545, Kenilworth, NJ 07033, (3) Chemical Research Department, Schering-Plough Research Institute, 2015 Galloping Hill Road, K-15-3 3545, Kenilworth, NJ 07033-1300, (4) Schering-Plough Research Institute, 2015 Galloping Hill Rd, K-15-3-3545, Kenilworth, NJ 07033, (5) Virology, Schering-Plough Research Institute, 2015 Galloping Hill Rd, K-15-3, Kenilworth, NJ 07033, (6) Drug Metabolism, Schering-Plough Research Institute, (7) Department of Chemical Research, Schering Plough Research Institute, 2015 Galloping Hill Road, Kenilworth, NJ 07033
Hepatitis C Virus (HCV) infection is the major cause of chronic liver disease, leading to cirrhosis and hepatocellular carcinoma, which affects more than 200 million, people worldwide. Currently the only therapeutic regimens are subcutaneous interferon-alpha or PEG-interferon alpha alone or in combination with oral ribavirin. Although combination therapy is reasonably successful with the majority of genotypes, its efficacy against the genotype 1 and relapse patients is moderate at best, with only about 40% of the patients showing sustained virological response. Significant efforts are now directed towards development of therapies that target key enzymes vital to HCV replication and maturation. Macrocyclization strategy has been widely used to depetidize various peptidic inhibitors. X-ray structure of NS3 enzyme reveal a very shallow binding pocket at the catalytic site which makes development of inhibitors a daunting task. In this oral presentation we discuss, the design and the SAR of P1-P3 derived macrocyclic inhibitors that contain a ketoamide trap. Structure activity of the P1-P3 linker as well as the P3 capping region is extensively discussed. Compounds with excellent enzyme binding and cellular activities were identified. X-ray structure of inhibitor bound to the active site of the enzyme is also discussed. Macrocyclization proved to be an effective tool for depeptidization of these inhibitors, imparting enhanced metabolic stability and improved pharmacokinetic properties in the resultant molecules.