Designing extensively fluorinated proteins

BIOL 25

Hyang-Yeol Lee, hylee@umich.edu and E. Neil G. Marsh, nmarsh@umich.edu. Chemistry, University Of Michigan, 930 N. University Ave., Ann Arbor, MI 48105

Perfluorocarbons have unique and valuable physical properties not found in Nature. By incorporating fluorine into proteins, it might be possible to produce biological molecules with novel and useful properties.  Fluorocarbons are intrinsically more hydrophobic than hydrocarbons, and because partitioning of hydrophobic residues out of the aqueous phase is a major driving force in protein folding, are expected to be more stable.  Our research has focused on the perfluorinated amino acid L-5,5,5,5',5',5'-hexafluoroleucine (hFLeu), which we have incorporated into de novo designed peptides.  Here we present a detailed investigation into the effect on structure and stability of systematically repacking the hydrophobic core of a model protein with hFLeu.  The starting point was a 27-residue peptide, a4-H, that adopts an antiparallel 4-a-helix bundle structure, and in which the hydrophobic core comprise six layers of leucine residues introduced at the "a" and "d" positions of the canonical heptad repeat. A series of peptides were synthesized in which the central two (a4-F2), four (a4-F4), or all six layers (a4-F6) of the core were substituted hFLeu.  The free energy of unfolding increases by 0.3 (kcal/mol)/hFLeu on repacking the central two layers and by an additional 0.12 (kcal/mol)/hFLeu on repacking additional layers, so that a4-F6 is ~25% more stable than the nonfluorinated protein a4-H. One-dimensional proton, two-dimensional 1H-15N HSQC, and 19F NMR spectroscopies were used to examine the effect of fluorination on the conformational dynamics of the peptide.  Unexpectedly, increasing the degree of fluorination also appears to result in peptides that possess a more structured backbone and less fluid hydrophobic core.  The latter only occurs in a4-F4 and a4-F6, suggesting that crowding of the hFLeu residues may restrict the amplitude and/or time scales for rotation of the side chains.

 

Protein Structure and Folding
4:30 PM-6:30 PM, Sunday, 10 September 2006 Moscone Center -- Hall D, Poster

Sci-Mix
8:00 PM-10:00 PM, Monday, 11 September 2006 Moscone Center -- Hall D, Sci-Mix

Division of Biological Chemistry

The 232nd ACS National Meeting, San Francisco, CA, September 10-14, 2006